Short Bio
Giulia Cesaro earned her Bachelor’s degree in Biomedical Engineering from the University of Padua in 2018, followed by a Master’s degree in Bioengineering (summa cum laude) from the same university in 2020. She completed her Ph.D. in Information Engineering at the University of Padua in 2025, focusing on the development of algorithms and computational methods for the analysis of single-cell transcriptomics data. She is currently a postdoctoral researcher at the Department of Information Engineering, working in the SysBioBig lab (Systems Biology and Bioinformatics Group) under the supervision of Prof. Barbara Di Camillo. Her current research focuses on the development of efficient algorithms and software tools for the analysis and interpretation of omics data .
The complete CV is available here: link to CV.
Academic Degree
Bachelor's degree in Biomedical Engineering at the University of Padova, Padova, Italy
2015 - 2018
Thesis title: Analisi biomeccanica della corsa negli sprinter: confronto tra squadra maschile e femminile d’èlite.
Supervisor: Prof. Zimi Sawacha
Master's Degree in Bioengineering at the University of Padova, Padova, Italy
2018 - 2020
Thesis title: Inference and analysis of cell-cell communication using scRNA-seq data.
Supervisor: Prof. Barbara Di Camillo
PhD in Information Engineering at the University of Padova, Padova, Italy
2021-2024
Thesis title: "Development of computational models to infer cell-cell communication using single-cell RNA sequencing data"
Appointments
Junior Postdoctoral Researcher at the Department of Information Engineering, University of Padova, Padova, Italy
2024 - today
Research Collaborator at the Department of Information Engineering, University of Padova, Padova, Italy
Feb 2021 - Sep 2021
Visiting PhD Student at the Institute for Computational Genomics at the RWTH Aachen University, Germany
Jan 2024 - July 2024
Awards
Best PhD thesis award from Gruppo Nazionale di Bioingegneria (GNB) - year 2025
Thesis title: "Development of computational models to infer cell-cell communication using single-cell RNA sequencing data"
Best paper award at 33rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2025), 12-14 March 2025, Torino, Italy.
Article title: quickSparseM: a library for memory- and time-efficient computation on large, sparse matrices with application to omics data. (Track: "High Performance Computing in Modelling and Simulation")
Long-Mobility Grant from "Fondazione Ing. Aldo Gini" - year 2023
November, 2023
"Best Oral Presentation" at Student Council Symposium at ISMB/ECCB 2023
June, 2022 - Verona, Italy
"Best Flash Talk" at Italian Bioinformatics Society (BITS2022) PhD Student Symposium
June, 2022 - Verona, Italy
Students Supervision
Giulia Cesaro has served as co-supervisor for:
- 3 Master Degree student’s thesis in Computer Engineering.
- 2 Master Degree student’s thesis in Bioengineering.
- 1 Master Degree student’s thesis in Molecular Biology.
- 2 Bachelor Degree student’s thesis in Biomedical Engineering.
- 1 Second-level Short Specialisation Degree student’s thesis in Omic Data Analysis.
Publications
- G. Cesaro, G. Baruzzo, G. Tussardi, B. Di Camillo, “Differential cellular communication inference framework for large-scale single-cell RNA-sequencing data”,
NAR Genomics and Bioinformatics , 2025, 7(2). (DOI: 10.1093/nargab/lqaf084) - G. Cesaro, J. Nagai, N. Gnoato, A. Chiodi, G. Tussardi, V. Klöker, C. Musumarrra, E. Mosca, I. Costa, B. Di Camillo, E. Calura, G. Baruzzo, “Advances and Challenges in Cell-Cell Communication Inference: A Comprehensive Review of Tools, Resources, and Future Directions”,
Briefings in Bioinformatics, 2025, 26(3). (DOI: 10.1109/PDP66500.2025.00045) - G. Baruzzo, G. Cesaro, B. Di Camillo, “quickSparseM: a library for memory- and time-efficient computation on large, sparse matrices with application to omics data”,
Proceedings of the 33rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2025), IEEE Computer Society Digital Libray, 2025. (DOI: 10.1093/bioinformatics/btac036) - G. Baruzzo, G. Cesaro, B. Di Camillo, “Identify, quantify and characterize cellular communication from single cell RNA sequencing data with scSeqComm”,
Bioinformatics, 2022, 38(7):1920-1929. (DOI: 10.1093/bioinformatics/btac036) - G. Cesaro, M. Milia, G. Baruzzo, G. Finco, F. Morandini, A. Lazzarini, P. Alotto, N.F. da Cunha Carvalho de Miranda, Z. Trajanoski, F. Finotello, B. Di Camillo, “MAST: a hybrid Multi-Agent Spatio-Temporal model of tumor microenvironment informed using a data-driven approach”,
Bioinformatics Advances, 2022. (DOI: 10.1093/bioadv/vbac092)
Latest conference contributions
- Oral presentation: G. Cesaro, J. Nagai, G. Baruzzo, B. Di Camillo, I. Costa, "Cell-specific Graph Operation Strategy on Signaling Intracellular Pathways" at 33rd Conference on Intelligent Systems for Molecular Biology and the 24th European Conference on Com- putational Biology (ISMB/ECCB 2025)
- Oral presentation: H. Gleitz, M. L. Ruiz, J. Nagai, G. Cesaro, I. Costa and R.Schneider, "Nichesphere: A thod to identify disease specific physical cell-cell interactions and underlying cellular communication networks" at 33rd Conference on Intelligent Systems for Molecular Biology and the 24th European Conference on Computational Biology (ISMB/ECCB 2025)
- Poster presentation: M. Baldan, G. Cesaro, G. Baruzzo, B. Di Camillo, "Integrating Biological Knowledge for Feature Summarization in Spatial Transcriptomics" at 33rd Conference on Intelligent Systems for Molecular Biology and the 24th European Conference on Com- putational Biology (ISMB/ECCB 2025)
- Poster presentation: G. Tussardi, G. Cesaro, G. Baruzzo, B. Di Camillo, "Multilevel Network Visualization for Deciphering Dysregulated Cellular Signalling" at 33rd Conference on Intelligent Systems for Molecular Biology and the 24th European Conference on Computational Biology (ISMB/ECCB 2025)
- Oral presentation: M. Baldan, G. Cesaro, G. Baruzzo, B. Di Camillo, "Biologically Informed procedure for Feature Summarization in Spatial Transcriptomics" at International Joint Conference on Neural Networks (IJCNN2025)
- Oral presentation: G. Baruzzo, G. Cesaro, B. Di Camillo, "Sustainable computation on large, sparse omics matrices with quickSparseM" at 21st Annual Meeting of the Bioinformatics Italian Society (BITS2025)
- Oral presentation: G. Cesaro, J. Nagai, G. Baruzzo, B. Di Camillo, I. Costa, "Intracellular signaling pathway reconstruction at single-cell resolution" at 21st Annual Meeting of the Bioinformatics Italian Society (BITS2025)
- Oral presentation: G. Baruzzo, G. Cesaro, B. Di Camillo, "quickSparseM: a library for memory- and time-efficient computation on large, sparse marices with application to omics data" at 33rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP2025)
Membership
Member of International Society of Computational Biology - ISCB
Secretary of Italian Regional Student Group (RSG Italy) of Internation Society for Computational Biology (ISCB)
Member of Young-InfoLife group, InfoLife National Laboratory of CINI
Last update: 04-08-2025