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Students interested in pursuing a PhD on topics related to Algorithms in Bioinformatics are welcome to contact me. I am mainly interested on all aspects related to algorithms on strings (and sometimes graphs) and data structures, so there might also be opportunities to apply them in areas other than bioinformatics (for example I am also a member of the inter-departments center Human Inspired Technologies).
Current opportunities
General information about application for PhD can be found here in italian , or in english (also here ).
Thesis are available for Laurea Triennale and Magistrale. The topics are mainly related to Bioinformatics and Computational Biology, in particular to algorithmics aspects of problems emerging in these fields. Thesis for Laurea Triennale can be either on state-of-the-art bibliographic research on some topic, or software development. Thesis for Laurea Magistrale usually include algorithms development and analysis and/or software implementation of state-of-the-art algorithms and related experiments. For more details send me an email.
Current people
Cinzia Pizzi, PI Giovanni Faldani, Research fellow Eleonora Signor, Research fellow Lorenzo Spina, Master student in Computer Science Engineering Amirhossein Kahlor, Master student in Data Science Rudi Gaspardo, Master student in Computer Science Engineering (co-supervised with M.Comin) Mohammadali Lakchi, Master in Computer Science and Engineering Cosmin Andrei Albu, Bachelor in Computer Engineering Enci Guan, Bachelor in Computer Engineering Gianmaria Residori, Bachelor in Computer Engineering (stage) Beini Guan, Bachelor in Computer Engineering Alessandro Trigolo, Bachelor in Computer Engieering (stage)
Collaborations
Laxmi Parida, IBM T.J. Watson Center, NY, USA
Simona Rombo, Univ. of Palermo, Italy
Fabio Fassetti, Univ. of Calabria, Italy
Fabio Cunial, Broad Institute, USA
Roberto Franzosi, Emory University, GA, USA
Alessandro Mammana, Google, Swiss
Past Research Collaborators
Samuele Girotto, Research Fellow
Mattia Samory, Research Collaborator
Daniela Cuza, Research trainee
Past Master Students
Giorgio Gallina, 2023 now in the industry
Davide Dalle Pezze (co-supervision with F.Vandin), 2019, now PhD student
Simone Spangaro, Master in Computer Science and Engineering
Filippo Gambarotto, Master in Bioengineering
Mattia Ornamenti, 2015, now in the industry
Daniele Bisello, 2015, now in the industry
Francesco Carbone, 2014, now holding a research contract
Giulio Fracasso, 2014, now in the industry
Daniele Barilaro, 2013, now in the industry
Alessandro Mammana, Student at Scuola Galileiana di Studi Superiori 2012, now in the industry (Google)
Manuel Barbares, 2011, now in the industry
Giordano Zornetta, 2008, now in the industry
Alessio Favaretto, 2007, now in the Industry
Luca Bonomi, 2006, now postdoc at University of California - San Diego, USA
Past Bachelor Students
Davide Buttolo, 2023; Simone Scalabrin (stage), 2023; Zoren Martinez 2023, Francesco Tomasella 2023; Alex Papa; Pietro Maria Nobili; Giovanni Pardo; Federico Bozzato; Michele Gazzola; Simone Stranieri; Giovanni Savarese, 2016; Stefano Gennari, 2016 (co-tutoring with F.Vandin); Alberto Purpura, 2015; Roberto Campagnolo, 2015; Luca Schiappadini, 2013; Giorgio Vitale, 2013; Gabriele Pelizzari, 2013; Vasiar Allaj, 2013 now in the industry; Daniel Zucchetto, 2012 now PhD Student;
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