[7] C.Pizzi, S.Bortoluzzi, A.Bisognin, A.Coppe, G.A.Danieli
Detecting Seeded Motifs in DNA Sequences
Nucleic Acids Research, 33: e135, 2005 - Selected as Cover Paper online
| Curriculum | Research | Publications | Teaching | Contacts |
International Journals
[1] J.Korhonen, P.Martinmaki, C.Pizzi, P.Rastas, E.Ukkonen
MOODS: fast search for position weight matrix matches in DNA sequences
Bioinformatics 2009 25(23):3181-3182; online
[2] C.Pizzi, P.Rastas, E.Ukkonen
Finding significant matches of position weight matrices in linear time
Accepted for publication by IEEE Transaction on Computational Biology and Bioinformatics online
[3] C.Pizzi
k-difference matching in amortized linear time for all the words in a text
Theoretical Computer Science, 410(8-10): 983--987
online
[4] A.Apostolico, C.Pizzi
Scoring Unusual Words with Varying Mismatch Errors
Mathematics in Computer Science, Special Issue in Combinatorial Algorithms, 1(4):639-653, 2008
online
[5] C.Pizzi, E.Ukkonen
Fast Profile Matching Algorithms - a survey
Theoretical Computer Science, 395(2-3), 2008, pp 137--157, Special Issue SAIL: String Algorithms, Information and Learning
online
[6]
A.Apostolico, C.Pizzi
Motif Discovery by Monotone Scores
Discrete Applied Mathematics, vol. 155(6-7), 2007, pp. 695-706, special issue
Computational Molecular Biology Series
online
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[7] C.Pizzi, S.Bortoluzzi, A.Bisognin, A.Coppe, G.A.Danieli |
[8]
S.Bortoluzzi, A.Coppe, A.Bisognin, C.Pizzi, G.A.Danieli
A Multistep Bioinformatic Approach Detects Putative
Regulatory Elements in Gene Promoters
BMC Bioinformatics 2005, 6:121 (18 May 2005) online
International Conferences
[9]
C.Pizzi, M.Bianco
Expectation of Strings with Mismatches Under Markov Chain Distribution
In Proc. of 16th Symposium on String Processing and Information Retrieval (SPIRE 2009), Saariselka, Finland, Aug 2009, LNCS 5721 pp 222--233. online
[10]
C.Pizzi, E.Ukkonen
Efficient Discovery of Significant Co-occurrences with an Application to Dyad Motif Finding(abstract)
In Proc. of the 4th Annual RECOMB Satellite on Regulatory Genomics,
BROAD Institute Cambridge(MA), USA , Oct 2007
[11]
C.Pizzi, P.Rastas, E.Ukkonen
Fast Search Algorithms for Position Specific Scoring Matrices
In Proc. of the 1st Conference on Bioinformatics Research and Development (BIRD 07), Berlin, Germany, March 2007,
LNCS/LCBI 4414 pp 239--250. online
[12]
A.Apostolico, C.Pizzi
On the Monotonicity of the String Correction Factor
for Words with Mismatches
In Combinatorial and Algorithmic Foundations of Pattern and Association
Discovery,
Dagsthul Seminar Proceedings, 2006
online
[13]
A.Apostolico, C.Pizzi
Monotone Scoring of Pattern with Mismatches
In Proc. of the 4th Workshop on Algorithms in Bioinformatics (WABI 2004), Bergen, Norway, Sept 2004,
LNCS/LCBI 3240 pp 87--98.
online
[14]
A.Apostolico, C.Pizzi, G.Satta
Optimal Discovery of Subword Associations in Strings
In Proc. of the 7th International Conference on Dicovery Science (DS 2004), Padova, Italy, Oct 2004,
LNCS 3245 pp 270--277.
online
[15] C.Pizzi, Conservative Approaches to the Discovery of Patterns in Biosequences, PhD Thesis , 2004
[16] C.Pizzi, Architettura e Funzionalita' di un Web Search Agent, Laurea Thesis , 2001
[17] C.Pizzi, Ontologies for Bioinformatics , 2002
[18] C.Pizzi, Cluster Analysis , 2002
[19] C.Pizzi, M.Falda, Le Reti Bayesiane , 2003
[20] C.Pizzi, HMM and their Applications to Bioinformatics , 2004
| Curriculum | Research | Publications | Teaching | Contacts |